PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0453.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 278aa    MW: 30747.9 Da    PI: 9.0658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0453.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056486123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C++ F r  nL+ H r+H
  Kaladp0053s0453.1.p 64 HICEICNQGFQRDQNLQMHRRRH 86
                         68********************9 PP

2zf-C2H217.89.4e-06141163123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k +  +s++k H++t+
  Kaladp0053s0453.1.p 141 WVCGKCSKAYAVQSDYKAHLKTC 163
                          58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0336486IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.95E-56486No hitNo description
PROSITE profilePS5015710.0766486IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035599105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4132162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-5136161No hitNo description
SMARTSM0035587141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLGKSRGAEN PFSSSLHEPT PCLENKDVSN STSSKRKRRP AGTPDPDAEV ISLSPKTLLE  60
SDQHICEICN QGFQRDQNLQ MHRRRHKVPW KLLKRENPGQ RKRVYVCPEP SCLHHNPSHA  120
LGDLVGIKKH FKRKHSNLKE WVCGKCSKAY AVQSDYKAHL KTCGTRGHSC DCGRIFSKVE  180
SFIEHQDTCQ VSCLMSDKHI PSTKQTILLS GTASSSGSAS VHIPDHGAAP WLQAGSITEI  240
GMIMKGNKDK IAADVIGNGE YHNLELQLST TSTWYGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318320.11e-112hypothetical protein POPTR_0012s03730g
SwissprotF4IPE31e-105IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A068TRJ71e-113A0A068TRJ7_COFCA; Uncharacterized protein
STRINGPOPTR_0012s03730.11e-112(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-104C2H2-like zinc finger protein